Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC106886.4-201ENST00000623557 2502 ntBASIC16.97■□□□□ 0.31
USP41Q3LFD5 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 TARDBPP1-201ENST00000442013 1203 ntBASIC16.97■□□□□ 0.31
USP41Q3LFD5 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 AL391069.4-201ENST00000609583 481 ntBASIC16.97■□□□□ 0.31
USP41Q3LFD5 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 AP001282.1-201ENST00000531301 1499 ntBASIC16.97■□□□□ 0.31
USP41Q3LFD5 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
USP41Q3LFD5 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP41Q3LFD5 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 AC005052.1-201ENST00000625181 2492 ntBASIC16.96■□□□□ 0.31
USP41Q3LFD5 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 AC103702.1-201ENST00000548801 2630 ntBASIC16.96■□□□□ 0.31
USP41Q3LFD5 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 AL158212.4-201ENST00000624062 1286 ntBASIC16.96■□□□□ 0.31
USP41Q3LFD5 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.96■□□□□ 0.31
USP41Q3LFD5 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP41Q3LFD5 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.3
USP41Q3LFD5 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
USP41Q3LFD5 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.96■□□□□ 0.3
USP41Q3LFD5 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.3
USP41Q3LFD5 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.3
USP41Q3LFD5 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 MIR1909-201ENST00000411312 80 ntBASIC16.95■□□□□ 0.3
USP41Q3LFD5 TMEM14DP-201ENST00000422205 345 ntBASIC16.95■□□□□ 0.3
USP41Q3LFD5 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 AC015936.2-201ENST00000593177 259 ntBASIC16.95■□□□□ 0.3
USP41Q3LFD5 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 ALOX12P2-203ENST00000570921 1945 ntBASIC16.95■□□□□ 0.3
USP41Q3LFD5 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
USP41Q3LFD5 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP41Q3LFD5 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms