Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHD9Q3L8U1 AC004899.1-201ENST00000424687 1714 ntBASIC16.59■□□□□ 0.25
CHD9Q3L8U1 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.59■□□□□ 0.25
CHD9Q3L8U1 AC012618.1-201ENST00000461223 412 ntBASIC16.59■□□□□ 0.25
CHD9Q3L8U1 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CHD9Q3L8U1 AP001582.1-201ENST00000525856 295 ntBASIC16.59■□□□□ 0.25
CHD9Q3L8U1 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.59■□□□□ 0.25
CHD9Q3L8U1 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHD9Q3L8U1 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.58■□□□□ 0.25
CHD9Q3L8U1 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
CHD9Q3L8U1 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CHD9Q3L8U1 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CHD9Q3L8U1 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.58■□□□□ 0.25
CHD9Q3L8U1 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.58■□□□□ 0.25
CHD9Q3L8U1 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CHD9Q3L8U1 AC013355.1-201ENST00000562625 723 ntBASIC16.58■□□□□ 0.25
CHD9Q3L8U1 AC007663.3-201ENST00000609632 465 ntBASIC16.58■□□□□ 0.25
CHD9Q3L8U1 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.58■□□□□ 0.25
CHD9Q3L8U1 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 AC234644.1-201ENST00000406065 370 ntBASIC16.58■□□□□ 0.24
CHD9Q3L8U1 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 AC135983.4-201ENST00000564116 1262 ntBASIC16.58■□□□□ 0.24
CHD9Q3L8U1 COX6A1P2-201ENST00000620597 330 ntBASIC16.58■□□□□ 0.24
CHD9Q3L8U1 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 AL645608.8-201ENST00000606034 2086 ntBASIC16.58■□□□□ 0.24
CHD9Q3L8U1 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CHD9Q3L8U1 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 HIST2H2BB-201ENST00000449108 381 ntBASIC16.57■□□□□ 0.24
CHD9Q3L8U1 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 WT1-AS_6.1-201ENST00000614919 121 ntBASIC16.57■□□□□ 0.24
CHD9Q3L8U1 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 AL138799.1-201ENST00000448213 1675 ntBASIC16.57■□□□□ 0.24
CHD9Q3L8U1 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHD9Q3L8U1 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 LINC01144-201ENST00000626198 1710 ntBASIC16.56■□□□□ 0.24
CHD9Q3L8U1 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.56■□□□□ 0.24
CHD9Q3L8U1 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms