Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.75■□□□□ 0.27
HDAC4P56524 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.75■□□□□ 0.27
HDAC4P56524 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.75■□□□□ 0.27
HDAC4P56524 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.75■□□□□ 0.27
HDAC4P56524 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.75■□□□□ 0.27
HDAC4P56524 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HDAC4P56524 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.75■□□□□ 0.27
HDAC4P56524 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HDAC4P56524 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HDAC4P56524 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.75■□□□□ 0.27
HDAC4P56524 AL353705.2-201ENST00000428243 662 ntBASIC16.75■□□□□ 0.27
HDAC4P56524 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.75■□□□□ 0.27
HDAC4P56524 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.75■□□□□ 0.27
HDAC4P56524 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
HDAC4P56524 AL512356.2-201ENST00000546955 174 ntBASIC16.75■□□□□ 0.27
HDAC4P56524 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 LINC00628-201ENST00000628516 1289 ntBASIC16.75■□□□□ 0.27
HDAC4P56524 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.75■□□□□ 0.27
HDAC4P56524 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HDAC4P56524 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
HDAC4P56524 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HDAC4P56524 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.74■□□□□ 0.27
HDAC4P56524 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
HDAC4P56524 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 AC004987.2-201ENST00000395959 1148 ntBASIC16.74■□□□□ 0.27
HDAC4P56524 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.74■□□□□ 0.27
HDAC4P56524 TSEN15P1-201ENST00000423257 515 ntBASIC16.74■□□□□ 0.27
HDAC4P56524 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.74■□□□□ 0.27
HDAC4P56524 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
HDAC4P56524 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.74■□□□□ 0.27
HDAC4P56524 AC105021.1-202ENST00000570572 669 ntBASIC16.74■□□□□ 0.27
HDAC4P56524 MIR4453-201ENST00000584019 89 ntBASIC16.74■□□□□ 0.27
HDAC4P56524 AC003101.2-201ENST00000612557 442 ntBASIC16.74■□□□□ 0.27
HDAC4P56524 AC007967.4-201ENST00000614700 386 ntBASIC16.74■□□□□ 0.27
HDAC4P56524 MIR6080-201ENST00000617359 66 ntBASIC16.74■□□□□ 0.27
HDAC4P56524 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.74■□□□□ 0.27
HDAC4P56524 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
HDAC4P56524 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.74■□□□□ 0.27
HDAC4P56524 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HDAC4P56524 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC4P56524 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.74■□□□□ 0.27
HDAC4P56524 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.74■□□□□ 0.27
HDAC4P56524 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.73■□□□□ 0.27
HDAC4P56524 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC4P56524 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HDAC4P56524 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HDAC4P56524 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 AC026979.3-201ENST00000607315 403 ntBASIC16.73■□□□□ 0.27
HDAC4P56524 AC006538.3-201ENST00000612495 578 ntBASIC16.73■□□□□ 0.27
HDAC4P56524 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC4P56524 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HDAC4P56524 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 PRAL-201ENST00000624952 3286 ntBASIC16.73■□□□□ 0.27
HDAC4P56524 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HDAC4P56524 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms