Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
MSH6P52701 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC21.83■■□□□ 1.08
MSH6P52701 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC21.83■■□□□ 1.08
MSH6P52701 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
MSH6P52701 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.08
MSH6P52701 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC21.83■■□□□ 1.08
MSH6P52701 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC21.83■■□□□ 1.08
MSH6P52701 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC21.83■■□□□ 1.08
MSH6P52701 RN7SL574P-201ENST00000581512 297 ntBASIC21.83■■□□□ 1.08
MSH6P52701 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC21.83■■□□□ 1.08
MSH6P52701 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
MSH6P52701 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
MSH6P52701 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
MSH6P52701 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC21.83■■□□□ 1.08
MSH6P52701 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
MSH6P52701 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.08
MSH6P52701 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
MSH6P52701 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 AC007274.2-201ENST00000421675 662 ntBASIC21.82■■□□□ 1.08
MSH6P52701 AC069218.1-201ENST00000435269 762 ntBASIC21.82■■□□□ 1.08
MSH6P52701 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC21.82■■□□□ 1.08
MSH6P52701 AC114501.1-201ENST00000445949 172 ntBASIC21.82■■□□□ 1.08
MSH6P52701 IQSEC3P1-201ENST00000538799 536 ntBASIC21.82■■□□□ 1.08
MSH6P52701 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC21.82■■□□□ 1.08
MSH6P52701 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC21.82■■□□□ 1.08
MSH6P52701 AC026740.1-201ENST00000607068 791 ntBASIC21.82■■□□□ 1.08
MSH6P52701 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC21.82■■□□□ 1.08
MSH6P52701 VILL-207ENST00000465644 1857 ntTSL 5 BASIC21.82■■□□□ 1.08
MSH6P52701 AC006480.2-201ENST00000609770 1337 ntBASIC21.82■■□□□ 1.08
MSH6P52701 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH6P52701 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH6P52701 AC060834.1-201ENST00000443027 2032 ntBASIC21.81■■□□□ 1.08
MSH6P52701 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH6P52701 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 TP73-209ENST00000603362 1668 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH6P52701 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH6P52701 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH6P52701 AL008707.1-201ENST00000422498 534 ntBASIC21.81■■□□□ 1.08
MSH6P52701 HNRNPA1P63-201ENST00000427917 963 ntBASIC21.81■■□□□ 1.08
MSH6P52701 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
MSH6P52701 PHKG1P2-201ENST00000457537 863 ntBASIC21.81■■□□□ 1.08
MSH6P52701 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH6P52701 CFL1-214ENST00000534769 758 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH6P52701 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH6P52701 KLK11-210ENST00000600362 759 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH6P52701 AC091544.8-201ENST00000619490 361 ntBASIC21.81■■□□□ 1.08
MSH6P52701 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC21.81■■□□□ 1.08
MSH6P52701 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
MSH6P52701 AL603756.1-201ENST00000606511 2163 ntBASIC21.81■■□□□ 1.08
MSH6P52701 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH6P52701 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH6P52701 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH6P52701 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH6P52701 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH6P52701 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH6P52701 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
MSH6P52701 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH6P52701 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH6P52701 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC21.8■■□□□ 1.08
MSH6P52701 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH6P52701 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC21.8■■□□□ 1.08
MSH6P52701 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC21.8■■□□□ 1.08
MSH6P52701 RN7SL555P-201ENST00000584742 339 ntBASIC21.8■■□□□ 1.08
MSH6P52701 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH6P52701 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms