Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC140878.1-201ENST00000565277 250 ntBASIC15.73■□□□□ 0.11
SHMT2P34897 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHMT2P34897 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.73■□□□□ 0.11
SHMT2P34897 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.73■□□□□ 0.11
SHMT2P34897 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.73■□□□□ 0.11
SHMT2P34897 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.73■□□□□ 0.11
SHMT2P34897 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SHMT2P34897 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHMT2P34897 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
SHMT2P34897 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHMT2P34897 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.73■□□□□ 0.11
SHMT2P34897 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
SHMT2P34897 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHMT2P34897 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHMT2P34897 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.73■□□□□ 0.11
SHMT2P34897 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.72■□□□□ 0.11
SHMT2P34897 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
SHMT2P34897 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.72■□□□□ 0.11
SHMT2P34897 LINC02228-204ENST00000642115 2962 ntBASIC15.72■□□□□ 0.11
SHMT2P34897 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.72■□□□□ 0.11
SHMT2P34897 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SHMT2P34897 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
SHMT2P34897 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.72■□□□□ 0.11
SHMT2P34897 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SHMT2P34897 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.72■□□□□ 0.11
SHMT2P34897 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.72■□□□□ 0.11
SHMT2P34897 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
SHMT2P34897 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.72■□□□□ 0.11
SHMT2P34897 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SHMT2P34897 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SHMT2P34897 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.72■□□□□ 0.11
SHMT2P34897 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.72■□□□□ 0.11
SHMT2P34897 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHMT2P34897 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.72■□□□□ 0.11
SHMT2P34897 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.72■□□□□ 0.11
SHMT2P34897 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.71■□□□□ 0.11
SHMT2P34897 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
SHMT2P34897 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.71■□□□□ 0.11
SHMT2P34897 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
SHMT2P34897 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.71■□□□□ 0.11
SHMT2P34897 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.71■□□□□ 0.11
SHMT2P34897 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.71■□□□□ 0.11
SHMT2P34897 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.71■□□□□ 0.11
SHMT2P34897 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 AC069120.2-201ENST00000524091 540 ntBASIC15.71■□□□□ 0.11
SHMT2P34897 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.71■□□□□ 0.11
SHMT2P34897 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.71■□□□□ 0.11
SHMT2P34897 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.71■□□□□ 0.11
SHMT2P34897 AC105021.1-202ENST00000570572 669 ntBASIC15.71■□□□□ 0.11
SHMT2P34897 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.71■□□□□ 0.11
SHMT2P34897 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.71■□□□□ 0.11
SHMT2P34897 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 AC093512.1-201ENST00000617969 520 ntBASIC15.71■□□□□ 0.11
SHMT2P34897 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
SHMT2P34897 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.71■□□□□ 0.11
SHMT2P34897 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHMT2P34897 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.71■□□□□ 0.11
SHMT2P34897 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHMT2P34897 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHMT2P34897 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHMT2P34897 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.71■□□□□ 0.1
SHMT2P34897 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHMT2P34897 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.71■□□□□ 0.1
SHMT2P34897 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHMT2P34897 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms