Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ACTG1P14-201ENST00000446382 1122 ntBASIC16.16■□□□□ 0.18
PTPN4P29074 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 KRT8P49-201ENST00000604166 1432 ntBASIC16.16■□□□□ 0.18
PTPN4P29074 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 TMBIM7P-203ENST00000641617 1718 ntBASIC16.16■□□□□ 0.18
PTPN4P29074 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PTPN4P29074 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PTPN4P29074 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.15■□□□□ 0.18
PTPN4P29074 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.15■□□□□ 0.18
PTPN4P29074 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PTPN4P29074 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.15■□□□□ 0.18
PTPN4P29074 FAM58CP-201ENST00000435741 640 ntBASIC16.15■□□□□ 0.18
PTPN4P29074 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.15■□□□□ 0.18
PTPN4P29074 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.15■□□□□ 0.18
PTPN4P29074 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.15■□□□□ 0.18
PTPN4P29074 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.15■□□□□ 0.18
PTPN4P29074 AL031432.2-201ENST00000566714 459 ntBASIC16.15■□□□□ 0.18
PTPN4P29074 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
PTPN4P29074 AL928711.1-201ENST00000570165 459 ntBASIC16.15■□□□□ 0.18
PTPN4P29074 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.15■□□□□ 0.18
PTPN4P29074 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
PTPN4P29074 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.15■□□□□ 0.18
PTPN4P29074 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.15■□□□□ 0.18
PTPN4P29074 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN4P29074 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
PTPN4P29074 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PTPN4P29074 AC020658.6-201ENST00000623564 1870 ntBASIC16.14■□□□□ 0.17
PTPN4P29074 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.14■□□□□ 0.17
PTPN4P29074 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN4P29074 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
PTPN4P29074 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN4P29074 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.14■□□□□ 0.17
PTPN4P29074 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.14■□□□□ 0.17
PTPN4P29074 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN4P29074 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.14■□□□□ 0.17
PTPN4P29074 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN4P29074 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN4P29074 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN4P29074 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN4P29074 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN4P29074 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.14■□□□□ 0.17
PTPN4P29074 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.14■□□□□ 0.17
PTPN4P29074 AC067930.6-201ENST00000623257 4947 ntBASIC16.14■□□□□ 0.17
PTPN4P29074 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN4P29074 AC007292.2-201ENST00000593524 1812 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 1227.1 ms