Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PDGFBP01127 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PDGFBP01127 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PDGFBP01127 AC067852.2-201ENST00000590513 2313 ntBASIC15.9■□□□□ 0.14
PDGFBP01127 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PDGFBP01127 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PDGFBP01127 KRT8P35-201ENST00000483942 1338 ntBASIC15.9■□□□□ 0.14
PDGFBP01127 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PDGFBP01127 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PDGFBP01127 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC15.9■□□□□ 0.14
PDGFBP01127 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PDGFBP01127 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.9■□□□□ 0.14
PDGFBP01127 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
PDGFBP01127 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
PDGFBP01127 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 AL354989.2-201ENST00000435838 1540 ntBASIC15.89■□□□□ 0.13
PDGFBP01127 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
PDGFBP01127 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.89■□□□□ 0.13
PDGFBP01127 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PDGFBP01127 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.89■□□□□ 0.13
PDGFBP01127 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.89■□□□□ 0.13
PDGFBP01127 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.89■□□□□ 0.13
PDGFBP01127 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.89■□□□□ 0.13
PDGFBP01127 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 AC104784.1-201ENST00000473096 294 ntBASIC15.89■□□□□ 0.13
PDGFBP01127 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.89■□□□□ 0.13
PDGFBP01127 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.89■□□□□ 0.13
PDGFBP01127 AP000346.4-201ENST00000614827 381 ntBASIC15.89■□□□□ 0.13
PDGFBP01127 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PDGFBP01127 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC15.89■□□□□ 0.13
PDGFBP01127 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC15.89■□□□□ 0.13
PDGFBP01127 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PDGFBP01127 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
PDGFBP01127 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.88■□□□□ 0.13
PDGFBP01127 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.88■□□□□ 0.13
PDGFBP01127 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.88■□□□□ 0.13
PDGFBP01127 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 Z97180.1-201ENST00000445173 988 ntBASIC15.88■□□□□ 0.13
PDGFBP01127 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.88■□□□□ 0.13
PDGFBP01127 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.88■□□□□ 0.13
PDGFBP01127 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.88■□□□□ 0.13
PDGFBP01127 RN7SL774P-201ENST00000577467 290 ntBASIC15.88■□□□□ 0.13
PDGFBP01127 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.88■□□□□ 0.13
PDGFBP01127 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.88■□□□□ 0.13
PDGFBP01127 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
PDGFBP01127 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.88■□□□□ 0.13
PDGFBP01127 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PDGFBP01127 LINC01144-201ENST00000626198 1710 ntBASIC15.88■□□□□ 0.13
PDGFBP01127 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.88■□□□□ 0.13
PDGFBP01127 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.88■□□□□ 0.13
PDGFBP01127 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
PDGFBP01127 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PDGFBP01127 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
PDGFBP01127 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
PDGFBP01127 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PDGFBP01127 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
PDGFBP01127 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.87■□□□□ 0.13
PDGFBP01127 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PDGFBP01127 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PDGFBP01127 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms