Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF40O75150 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RNF40O75150 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF40O75150 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.38■□□□□ 0.37
RNF40O75150 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF40O75150 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
RNF40O75150 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 AC138035.3-201ENST00000622706 2791 ntBASIC17.37■□□□□ 0.37
RNF40O75150 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 AC092474.2-201ENST00000424288 719 ntBASIC17.37■□□□□ 0.37
RNF40O75150 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 SPDYE11-202ENST00000450699 704 ntBASIC17.37■□□□□ 0.37
RNF40O75150 AC090142.2-201ENST00000483263 416 ntBASIC17.37■□□□□ 0.37
RNF40O75150 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 KRT8P48-201ENST00000515599 1220 ntBASIC17.37■□□□□ 0.37
RNF40O75150 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.37■□□□□ 0.37
RNF40O75150 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.37■□□□□ 0.37
RNF40O75150 SPDYE9P-201ENST00000570642 692 ntBASIC17.37■□□□□ 0.37
RNF40O75150 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF40O75150 SPDYE10P-202ENST00000612005 668 ntBASIC17.37■□□□□ 0.37
RNF40O75150 SPDYE8P-202ENST00000612377 668 ntBASIC17.37■□□□□ 0.37
RNF40O75150 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF40O75150 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF40O75150 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF40O75150 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF40O75150 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF40O75150 TCAF2P1-201ENST00000291129 2421 ntBASIC17.37■□□□□ 0.37
RNF40O75150 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF40O75150 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF40O75150 AC068587.6-202ENST00000641839 5619 ntBASIC17.36■□□□□ 0.37
RNF40O75150 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF40O75150 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 AC005237.2-201ENST00000434368 219 ntBASIC17.36■□□□□ 0.37
RNF40O75150 AC140658.5-201ENST00000438532 169 ntBASIC17.36■□□□□ 0.37
RNF40O75150 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.36■□□□□ 0.37
RNF40O75150 COX20P2-201ENST00000452636 358 ntBASIC17.36■□□□□ 0.37
RNF40O75150 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF40O75150 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.36■□□□□ 0.37
RNF40O75150 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 FAM86C2P-203ENST00000528684 1004 ntBASIC17.36■□□□□ 0.37
RNF40O75150 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.36■□□□□ 0.37
RNF40O75150 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.36■□□□□ 0.37
RNF40O75150 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.36■□□□□ 0.37
RNF40O75150 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 Z92544.3-201ENST00000624747 417 ntBASIC17.36■□□□□ 0.37
RNF40O75150 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 TUBB8P12-201ENST00000308911 1335 ntBASIC17.36■□□□□ 0.37
RNF40O75150 TUBB7P-202ENST00000428444 1305 ntBASIC17.36■□□□□ 0.37
RNF40O75150 TUBB8P7-204ENST00000567960 1332 ntBASIC17.36■□□□□ 0.37
RNF40O75150 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 AC023157.3-201ENST00000619086 2088 ntBASIC17.36■□□□□ 0.37
RNF40O75150 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
RNF40O75150 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.36■□□□□ 0.37
RNF40O75150 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF40O75150 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF40O75150 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms