Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 AC092474.2-201ENST00000424288 719 ntBASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 AC002347.1-201ENST00000569543 541 ntBASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 CRYGEP-201ENST00000412192 528 ntBASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 GPX1P2-201ENST00000429271 606 ntBASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 AL049840.3-201ENST00000602669 611 ntBASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 AC010507.1-201ENST00000633895 436 ntBASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 AC112693.3-201ENST00000624819 1983 ntBASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM49D1C9J1S8 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 TCAF2P1-201ENST00000291129 2421 ntBASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM49D1C9J1S8 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 AC098831.1-202ENST00000438821 336 ntBASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 HCG4B-203ENST00000450128 991 ntBASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 PMS2P7-201ENST00000506558 1336 ntBASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 AC009090.5-201ENST00000624886 2285 ntBASIC16.08■□□□□ 0.16
TRIM49D1C9J1S8 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms