Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIMCH1Q9UPQ0 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIMCH1Q9UPQ0 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LIMCH1Q9UPQ0 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LIMCH1Q9UPQ0 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.89■□□□□ 0.62
LIMCH1Q9UPQ0 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LIMCH1Q9UPQ0 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
LIMCH1Q9UPQ0 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIMCH1Q9UPQ0 AC006058.4-201ENST00000624016 1670 ntBASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 AC004987.2-201ENST00000395959 1148 ntBASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 LINC01225-203ENST00000563550 1244 ntBASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 MIR4313-201ENST00000580760 101 ntBASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMCH1Q9UPQ0 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 RPS8P6-201ENST00000426177 609 ntBASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 RN7SL589P-201ENST00000481268 310 ntBASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 RNA5SP410-201ENST00000516285 106 ntBASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 AL136982.4-201ENST00000437689 1740 ntBASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LIMCH1Q9UPQ0 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 SPCS2P4-201ENST00000436160 681 ntBASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 AP000842.3-202ENST00000569238 1080 ntBASIC18.87■□□□□ 0.61
LIMCH1Q9UPQ0 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms