Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 CES3-203ENST00000543856 3178 ntTSL 2 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 SNX1-214ENST00000625244 324 ntTSL 5 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC30.12■■■□□ 2.41
SHROOM4Q9ULL8 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 OARD1-212ENST00000482515 832 ntTSL 2 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC30.11■■■□□ 2.41
SHROOM4Q9ULL8 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 KRT8P37-201ENST00000451609 1420 ntBASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 SOCS2P1-201ENST00000417727 557 ntBASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 AC026954.1-201ENST00000429771 1293 ntBASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 AC106760.1-201ENST00000508690 800 ntBASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 AC016629.1-201ENST00000596579 586 ntBASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 AL008638.5-201ENST00000623814 1298 ntBASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHROOM4Q9ULL8 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 ELP6-209ENST00000446787 894 ntTSL 3 BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 ARTN-209ENST00000479128 471 ntTSL 3 BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHROOM4Q9ULL8 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 TARDBPP1-201ENST00000442013 1203 ntBASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 FADS2-212ENST00000522639 360 ntTSL 5 BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 FADS2-215ENST00000574708 385 ntTSL 3 BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC30.08■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms