Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 AL691432.1-201ENST00000596308 1422 ntBASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 SPDYE12P-201ENST00000618416 771 ntBASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TRIM39Q9HCM9 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 AL596087.1-201ENST00000400979 1969 ntBASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 AC004987.2-201ENST00000395959 1148 ntBASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 HAUS4P1-201ENST00000406739 1145 ntBASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 SPDYE17-201ENST00000412399 783 ntBASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 RPL37AP1-201ENST00000412502 279 ntBASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 BASP1P1-201ENST00000430708 665 ntBASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 RNA5SP421-201ENST00000516864 134 ntBASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 AC243562.2-201ENST00000561247 970 ntBASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 AL136982.4-201ENST00000437689 1740 ntBASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.93■□□□□ 0.14
TRIM39Q9HCM9 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM39Q9HCM9 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms