Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SPDYE19P-201ENST00000338590 713 ntBASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 TPRX2P-201ENST00000535362 881 ntBASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 AC138969.3-201ENST00000546612 1459 ntBASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 AC138932.2-201ENST00000548268 1459 ntBASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 AC126755.4-201ENST00000549796 1459 ntBASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 AC007541.1-201ENST00000570282 1469 ntBASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4AQ9BY43 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 AC015922.1-201ENST00000421102 1152 ntBASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 RARRES2P5-201ENST00000564013 466 ntBASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 SPDYE22P-201ENST00000582158 798 ntBASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 AL391005.1-201ENST00000623953 2435 ntBASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4AQ9BY43 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 SLC7A15P-201ENST00000424028 1363 ntBASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 PKIG-203ENST00000372887 769 ntTSL 3 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 SLED1-202ENST00000512051 380 ntBASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 HNRNPUP1-201ENST00000554987 333 ntBASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms