Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 KRT18P31-201ENST00000506277 1292 ntBASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 OR7E47P-204ENST00000575924 449 ntBASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 AL121772.3-201ENST00000610840 674 ntBASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 REXO1L6P-202ENST00000619970 1078 ntBASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 AL390755.1-201ENST00000623716 2027 ntBASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 AL358472.4-201ENST00000633140 710 ntBASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 AC232323.1-201ENST00000540724 2099 ntBASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 REXO1L5P-201ENST00000622260 2098 ntBASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28BQ9BUN5 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 CICP23-201ENST00000605013 2741 ntBASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 KRT18P21-201ENST00000515767 1272 ntBASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 AL645728.2-201ENST00000641974 660 ntBASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms