Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CICP13-201ENST00000422015 2789 ntBASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 AC140658.5-201ENST00000438532 169 ntBASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 RPL13AP23-201ENST00000480739 586 ntBASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 AC092865.6-201ENST00000642101 219 ntBASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 AC126177.1-201ENST00000547829 2218 ntBASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM56Q9BRZ2 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 AC104640.1-201ENST00000562617 2109 ntBASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 PPT1-215ENST00000641471 2368 ntBASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM56Q9BRZ2 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 AC106730.1-201ENST00000566722 1090 ntBASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 AC007064.4-201ENST00000637740 555 ntBASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms