Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.29■□□□□ 0.52
ATL3Q6DD88 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 AL450472.2-201ENST00000603663 1156 ntBASIC18.29■□□□□ 0.52
ATL3Q6DD88 AC027601.4-201ENST00000611259 610 ntBASIC18.29■□□□□ 0.52
ATL3Q6DD88 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATL3Q6DD88 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
ATL3Q6DD88 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 AC126365.1-201ENST00000578585 1514 ntBASIC18.28■□□□□ 0.52
ATL3Q6DD88 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 AC018892.3-201ENST00000623986 2499 ntBASIC18.28■□□□□ 0.52
ATL3Q6DD88 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 AL139010.1-201ENST00000454878 894 ntBASIC18.28■□□□□ 0.52
ATL3Q6DD88 PHKG1P2-201ENST00000457537 863 ntBASIC18.28■□□□□ 0.52
ATL3Q6DD88 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 KRT8P44-201ENST00000441609 1350 ntBASIC18.28■□□□□ 0.52
ATL3Q6DD88 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATL3Q6DD88 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.28■□□□□ 0.52
ATL3Q6DD88 AC127383.1-201ENST00000444697 1800 ntBASIC18.28■□□□□ 0.52
ATL3Q6DD88 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 C18orf15-201ENST00000623680 2534 ntBASIC18.27■□□□□ 0.52
ATL3Q6DD88 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 AL136982.4-201ENST00000437689 1740 ntBASIC18.27■□□□□ 0.52
ATL3Q6DD88 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 KRT8P37-201ENST00000451609 1420 ntBASIC18.27■□□□□ 0.52
ATL3Q6DD88 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 HLA-H-201ENST00000383620 1096 ntBASIC18.27■□□□□ 0.52
ATL3Q6DD88 KRT18P3-201ENST00000451602 1288 ntBASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms