Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NME3-204ENST00000563498 920 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 AL591684.3-201ENST00000605187 298 ntBASIC13.42□□□□□ -0.26
HOXA1P49639 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.42□□□□□ -0.26
HOXA1P49639 AL590326.2-201ENST00000625139 305 ntBASIC13.42□□□□□ -0.26
HOXA1P49639 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
HOXA1P49639 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HOXA1P49639 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 CICP8-201ENST00000455800 2813 ntBASIC13.41□□□□□ -0.26
HOXA1P49639 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HOXA1P49639 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXA1P49639 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.41□□□□□ -0.26
HOXA1P49639 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HOXA1P49639 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC13.41□□□□□ -0.26
HOXA1P49639 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC13.41□□□□□ -0.26
HOXA1P49639 MIR5100-201ENST00000579544 119 ntBASIC13.41□□□□□ -0.26
HOXA1P49639 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
HOXA1P49639 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXA1P49639 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 AC002310.6-201ENST00000624451 1377 ntBASIC13.41□□□□□ -0.26
HOXA1P49639 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXA1P49639 PTENP1-202ENST00000532280 3996 ntBASIC13.41□□□□□ -0.26
HOXA1P49639 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HOXA1P49639 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXA1P49639 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXA1P49639 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HOXA1P49639 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.4□□□□□ -0.26
HOXA1P49639 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
HOXA1P49639 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.4□□□□□ -0.26
HOXA1P49639 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC13.4□□□□□ -0.26
HOXA1P49639 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.4□□□□□ -0.26
HOXA1P49639 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 MED16-201ENST00000269814 1199 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 BET1L-206ENST00000486280 665 ntTSL 3 BASIC13.4□□□□□ -0.26
HOXA1P49639 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
HOXA1P49639 AC138894.3-201ENST00000603787 634 ntBASIC13.4□□□□□ -0.26
HOXA1P49639 AC069148.1-201ENST00000608741 768 ntBASIC13.4□□□□□ -0.26
HOXA1P49639 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC13.4□□□□□ -0.26
HOXA1P49639 BCL10-202ENST00000620248 774 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 AL022326.1-202ENST00000641533 845 ntBASIC13.4□□□□□ -0.26
HOXA1P49639 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
HOXA1P49639 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.4□□□□□ -0.26
HOXA1P49639 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms