Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 CYP4F24P-201ENST00000586049 1580 ntBASIC15.24■□□□□ 0.03
RORAP35398 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 AL353779.1-201ENST00000434793 351 ntBASIC15.24■□□□□ 0.03
RORAP35398 AC245100.5-201ENST00000452108 331 ntBASIC15.24■□□□□ 0.03
RORAP35398 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.24■□□□□ 0.03
RORAP35398 SPDYE18-201ENST00000510091 1050 ntBASIC15.24■□□□□ 0.03
RORAP35398 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 API5-211ENST00000534695 560 ntTSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.24■□□□□ 0.03
RORAP35398 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 AL596325.1-201ENST00000563991 1082 ntBASIC15.24■□□□□ 0.03
RORAP35398 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.24■□□□□ 0.03
RORAP35398 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.24■□□□□ 0.03
RORAP35398 MIR6069-201ENST00000620069 79 ntBASIC15.24■□□□□ 0.03
RORAP35398 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 AC007541.1-201ENST00000570282 1469 ntBASIC15.24■□□□□ 0.03
RORAP35398 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.24■□□□□ 0.03
RORAP35398 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RORAP35398 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
RORAP35398 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
RORAP35398 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.23■□□□□ 0.03
RORAP35398 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.23■□□□□ 0.03
RORAP35398 AC079328.2-201ENST00000561241 3354 ntBASIC15.23■□□□□ 0.03
RORAP35398 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.23■□□□□ 0.03
RORAP35398 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 GNAQP1-201ENST00000444815 1067 ntBASIC15.23■□□□□ 0.03
RORAP35398 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 SDHAP3-202ENST00000515467 728 ntBASIC15.23■□□□□ 0.03
RORAP35398 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
RORAP35398 TP53TG3HP-202ENST00000569755 579 ntBASIC15.23■□□□□ 0.03
RORAP35398 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.23■□□□□ 0.03
RORAP35398 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
RORAP35398 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.23■□□□□ 0.03
RORAP35398 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
RORAP35398 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.23■□□□□ 0.03
RORAP35398 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.23■□□□□ 0.03
RORAP35398 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.23■□□□□ 0.03
RORAP35398 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RORAP35398 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
RORAP35398 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms