Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A3P12111 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A3P12111 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A3P12111 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
COL6A3P12111 RN7SL846P-201ENST00000467429 292 ntBASIC16.27■□□□□ 0.2
COL6A3P12111 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC16.27■□□□□ 0.2
COL6A3P12111 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A3P12111 AC005632.3-201ENST00000605544 308 ntBASIC16.27■□□□□ 0.2
COL6A3P12111 AL139339.2-201ENST00000608063 657 ntBASIC16.27■□□□□ 0.2
COL6A3P12111 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC16.27■□□□□ 0.2
COL6A3P12111 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A3P12111 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A3P12111 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.27■□□□□ 0.2
COL6A3P12111 KRT8P4-201ENST00000509735 1454 ntBASIC16.27■□□□□ 0.2
COL6A3P12111 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A3P12111 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
COL6A3P12111 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A3P12111 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.27■□□□□ 0.19
COL6A3P12111 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A3P12111 AP000356.3-201ENST00000382243 753 ntBASIC16.27■□□□□ 0.19
COL6A3P12111 AC004987.2-201ENST00000395959 1148 ntBASIC16.27■□□□□ 0.19
COL6A3P12111 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC16.27■□□□□ 0.19
COL6A3P12111 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.27■□□□□ 0.19
COL6A3P12111 RNF165-205ENST00000588679 2904 ntBASIC16.27■□□□□ 0.19
COL6A3P12111 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A3P12111 GPAA1P2-202ENST00000606848 1787 ntBASIC16.27■□□□□ 0.19
COL6A3P12111 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.27■□□□□ 0.19
COL6A3P12111 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
COL6A3P12111 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.26■□□□□ 0.19
COL6A3P12111 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC16.26■□□□□ 0.19
COL6A3P12111 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A3P12111 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC16.26■□□□□ 0.19
COL6A3P12111 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.26■□□□□ 0.19
COL6A3P12111 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
COL6A3P12111 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
COL6A3P12111 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
COL6A3P12111 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.26■□□□□ 0.19
COL6A3P12111 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.26■□□□□ 0.19
COL6A3P12111 AC012073.1-201ENST00000606114 1108 ntBASIC16.26■□□□□ 0.19
COL6A3P12111 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A3P12111 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.26■□□□□ 0.19
COL6A3P12111 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.26■□□□□ 0.19
COL6A3P12111 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
COL6A3P12111 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
COL6A3P12111 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.26■□□□□ 0.19
COL6A3P12111 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A3P12111 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
COL6A3P12111 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.26■□□□□ 0.19
COL6A3P12111 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A3P12111 AC090510.3-201ENST00000615831 821 ntBASIC16.26■□□□□ 0.19
COL6A3P12111 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A3P12111 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A3P12111 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.25■□□□□ 0.19
COL6A3P12111 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.25■□□□□ 0.19
COL6A3P12111 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 AL627231.1-201ENST00000394467 1125 ntBASIC16.25■□□□□ 0.19
COL6A3P12111 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 AP001582.1-201ENST00000525856 295 ntBASIC16.25■□□□□ 0.19
COL6A3P12111 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
COL6A3P12111 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A3P12111 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.25■□□□□ 0.19
COL6A3P12111 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC16.25■□□□□ 0.19
COL6A3P12111 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A3P12111 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
COL6A3P12111 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A3P12111 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A3P12111 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A3P12111 KRT18P43-201ENST00000469825 1281 ntBASIC16.25■□□□□ 0.19
COL6A3P12111 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
COL6A3P12111 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC16.25■□□□□ 0.19
COL6A3P12111 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.25■□□□□ 0.19
COL6A3P12111 AC006548.2-201ENST00000605217 529 ntBASIC16.25■□□□□ 0.19
COL6A3P12111 AP001002.3-201ENST00000623482 206 ntBASIC16.25■□□□□ 0.19
COL6A3P12111 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL6A3P12111 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms