Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 ATF5-205ENST00000600336 682 ntTSL 2 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC21.08■□□□□ 0.97
CSB-PGBD3P0DP91 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CSB-PGBD3P0DP91 AC078925.2-201ENST00000624013 1973 ntBASIC21.08■□□□□ 0.96
CSB-PGBD3P0DP91 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC21.08■□□□□ 0.96
CSB-PGBD3P0DP91 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
CSB-PGBD3P0DP91 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CSB-PGBD3P0DP91 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC21.08■□□□□ 0.96
CSB-PGBD3P0DP91 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC21.08■□□□□ 0.96
CSB-PGBD3P0DP91 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CSB-PGBD3P0DP91 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC21.08■□□□□ 0.96
CSB-PGBD3P0DP91 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 GPAA1P2-201ENST00000417923 928 ntBASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 C2orf27AP3-201ENST00000434123 579 ntBASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 PHKG1P2-201ENST00000457537 863 ntBASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 AL354718.3-201ENST00000616414 581 ntBASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 CR382287.1-201ENST00000623954 586 ntBASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 REXO1L8P-201ENST00000604378 1897 ntBASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CSB-PGBD3P0DP91 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 AL139099.5-201ENST00000635274 300 ntBASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 VILL-207ENST00000465644 1857 ntTSL 5 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSB-PGBD3P0DP91 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSB-PGBD3P0DP91 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms