Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.09■□□□□ 0.17
SHOX2O60902 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
SHOX2O60902 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SHOX2O60902 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.09■□□□□ 0.17
SHOX2O60902 SIGLEC16-201ENST00000599858 1437 ntBASIC16.09■□□□□ 0.17
SHOX2O60902 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
SHOX2O60902 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.09■□□□□ 0.17
SHOX2O60902 COL6A4P2-202ENST00000504443 2753 ntBASIC16.09■□□□□ 0.17
SHOX2O60902 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHOX2O60902 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHOX2O60902 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC16.08■□□□□ 0.17
SHOX2O60902 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHOX2O60902 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHOX2O60902 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHOX2O60902 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SHOX2O60902 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.08■□□□□ 0.16
SHOX2O60902 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.08■□□□□ 0.16
SHOX2O60902 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 AK4P3-201ENST00000418260 669 ntBASIC16.08■□□□□ 0.16
SHOX2O60902 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.08■□□□□ 0.16
SHOX2O60902 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.08■□□□□ 0.16
SHOX2O60902 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
SHOX2O60902 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 AC097493.4-201ENST00000641197 219 ntBASIC16.08■□□□□ 0.16
SHOX2O60902 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.08■□□□□ 0.16
SHOX2O60902 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.08■□□□□ 0.16
SHOX2O60902 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC16.08■□□□□ 0.16
SHOX2O60902 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHOX2O60902 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC16.08■□□□□ 0.16
SHOX2O60902 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC16.07■□□□□ 0.16
SHOX2O60902 AC011474.4-201ENST00000623523 2076 ntBASIC16.07■□□□□ 0.16
SHOX2O60902 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.07■□□□□ 0.16
SHOX2O60902 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.07■□□□□ 0.16
SHOX2O60902 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.07■□□□□ 0.16
SHOX2O60902 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 AC092647.4-201ENST00000457211 535 ntBASIC16.07■□□□□ 0.16
SHOX2O60902 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.07■□□□□ 0.16
SHOX2O60902 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.07■□□□□ 0.16
SHOX2O60902 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
SHOX2O60902 AL160237.2-201ENST00000556165 472 ntBASIC16.07■□□□□ 0.16
SHOX2O60902 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.07■□□□□ 0.16
SHOX2O60902 AL592071.1-201ENST00000611956 408 ntBASIC16.07■□□□□ 0.16
SHOX2O60902 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.07■□□□□ 0.16
SHOX2O60902 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SHOX2O60902 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SHOX2O60902 AC127383.1-201ENST00000444697 1800 ntBASIC16.07■□□□□ 0.16
SHOX2O60902 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.07■□□□□ 0.16
SHOX2O60902 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHOX2O60902 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SHOX2O60902 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
SHOX2O60902 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
SHOX2O60902 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SHOX2O60902 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.06■□□□□ 0.16
SHOX2O60902 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.06■□□□□ 0.16
SHOX2O60902 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms