Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CUX2O14529 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CUX2O14529 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CUX2O14529 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
CUX2O14529 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CUX2O14529 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CUX2O14529 DDX39AP1-201ENST00000445147 1181 ntBASIC26.81■■□□□ 1.88
CUX2O14529 MARK2P5-201ENST00000507649 634 ntBASIC26.81■■□□□ 1.88
CUX2O14529 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX2O14529 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
CUX2O14529 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC26.81■■□□□ 1.88
CUX2O14529 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC26.81■■□□□ 1.88
CUX2O14529 RN7SL48P-201ENST00000579283 293 ntBASIC26.81■■□□□ 1.88
CUX2O14529 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC26.81■■□□□ 1.88
CUX2O14529 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX2O14529 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX2O14529 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC26.81■■□□□ 1.88
CUX2O14529 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
CUX2O14529 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC26.81■■□□□ 1.88
CUX2O14529 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CUX2O14529 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC26.81■■□□□ 1.88
CUX2O14529 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC26.81■■□□□ 1.88
CUX2O14529 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
CUX2O14529 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC26.81■■□□□ 1.88
CUX2O14529 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CUX2O14529 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC26.81■■□□□ 1.88
CUX2O14529 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
CUX2O14529 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
CUX2O14529 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC26.81■■□□□ 1.88
CUX2O14529 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CUX2O14529 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CUX2O14529 ACTBP7-201ENST00000418351 1124 ntBASIC26.81■■□□□ 1.88
CUX2O14529 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC26.81■■□□□ 1.88
CUX2O14529 POU5F1P6-201ENST00000466990 990 ntBASIC26.81■■□□□ 1.88
CUX2O14529 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC26.81■■□□□ 1.88
CUX2O14529 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CUX2O14529 CSH2-206ENST00000560142 749 ntTSL 5 BASIC26.81■■□□□ 1.88
CUX2O14529 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CUX2O14529 AC138894.2-201ENST00000602838 371 ntBASIC26.81■■□□□ 1.88
CUX2O14529 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX2O14529 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
CUX2O14529 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC26.8■■□□□ 1.88
CUX2O14529 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC26.8■■□□□ 1.88
CUX2O14529 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CUX2O14529 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CUX2O14529 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CUX2O14529 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CUX2O14529 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CUX2O14529 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC26.8■■□□□ 1.88
CUX2O14529 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC26.8■■□□□ 1.88
CUX2O14529 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC26.8■■□□□ 1.88
CUX2O14529 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CUX2O14529 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
CUX2O14529 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
CUX2O14529 ACTBP8-201ENST00000403258 1108 ntBASIC26.8■■□□□ 1.88
CUX2O14529 BRI3P1-201ENST00000440440 378 ntBASIC26.8■■□□□ 1.88
CUX2O14529 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC26.8■■□□□ 1.88
CUX2O14529 AP002803.1-201ENST00000528836 498 ntBASIC26.8■■□□□ 1.88
CUX2O14529 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC26.8■■□□□ 1.88
CUX2O14529 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC26.8■■□□□ 1.88
CUX2O14529 AL031713.1-201ENST00000564813 661 ntBASIC26.8■■□□□ 1.88
CUX2O14529 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC26.8■■□□□ 1.88
CUX2O14529 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC26.8■■□□□ 1.88
CUX2O14529 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC26.79■■□□□ 1.88
CUX2O14529 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC26.79■■□□□ 1.88
CUX2O14529 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC26.79■■□□□ 1.88
CUX2O14529 AC068880.1-201ENST00000507289 2297 ntBASIC26.79■■□□□ 1.88
CUX2O14529 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
CUX2O14529 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC26.79■■□□□ 1.88
CUX2O14529 ISCA2P1-201ENST00000425548 448 ntBASIC26.79■■□□□ 1.88
CUX2O14529 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
CUX2O14529 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC26.79■■□□□ 1.88
CUX2O14529 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
CUX2O14529 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC26.79■■□□□ 1.88
CUX2O14529 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CUX2O14529 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC26.79■■□□□ 1.88
CUX2O14529 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CUX2O14529 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CUX2O14529 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC26.78■■□□□ 1.88
CUX2O14529 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CUX2O14529 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC26.78■■□□□ 1.88
CUX2O14529 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
CUX2O14529 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
CUX2O14529 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC26.78■■□□□ 1.88
CUX2O14529 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC26.78■■□□□ 1.88
CUX2O14529 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CUX2O14529 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC26.78■■□□□ 1.88
CUX2O14529 AC007787.1-201ENST00000588095 1583 ntBASIC26.78■■□□□ 1.88
CUX2O14529 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC26.78■■□□□ 1.88
CUX2O14529 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CUX2O14529 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC26.78■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms