Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC073413.1-201ENST00000603927 732 ntBASIC12.18□□□□□ -0.46
COL6A5A8TX70 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 NDUFAB1P1-201ENST00000404262 460 ntBASIC12.18□□□□□ -0.46
COL6A5A8TX70 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 PSMD4P1-201ENST00000433951 1109 ntBASIC12.18□□□□□ -0.46
COL6A5A8TX70 RPL7P35-201ENST00000446943 740 ntBASIC12.18□□□□□ -0.46
COL6A5A8TX70 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 AP005019.2-201ENST00000615104 511 ntBASIC12.18□□□□□ -0.46
COL6A5A8TX70 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 MIR6816-201ENST00000620368 66 ntBASIC12.18□□□□□ -0.46
COL6A5A8TX70 AC092053.1-201ENST00000605787 1936 ntBASIC12.18□□□□□ -0.46
COL6A5A8TX70 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 VILL-207ENST00000465644 1857 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 FAM8A4P-201ENST00000435433 1213 ntBASIC12.17□□□□□ -0.46
COL6A5A8TX70 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 RPL17P45-201ENST00000586289 509 ntBASIC12.17□□□□□ -0.46
COL6A5A8TX70 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 AL161773.1-201ENST00000624845 863 ntBASIC12.17□□□□□ -0.46
COL6A5A8TX70 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms