Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 SPDYE19P-201ENST00000338590 713 ntBASIC14.74□□□□□ -0.05
LRFN1Q9P244 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 FO393414.2-201ENST00000405153 598 ntBASIC14.74□□□□□ -0.05
LRFN1Q9P244 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 AC114501.2-201ENST00000439631 535 ntBASIC14.74□□□□□ -0.05
LRFN1Q9P244 GNAQP1-201ENST00000444815 1067 ntBASIC14.74□□□□□ -0.05
LRFN1Q9P244 AC243562.2-201ENST00000561247 970 ntBASIC14.74□□□□□ -0.05
LRFN1Q9P244 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 AL109936.8-201ENST00000641772 604 ntBASIC14.74□□□□□ -0.05
LRFN1Q9P244 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.74□□□□□ -0.05
LRFN1Q9P244 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LRFN1Q9P244 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 AC004987.2-201ENST00000395959 1148 ntBASIC14.73□□□□□ -0.05
LRFN1Q9P244 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 DFFBP1-201ENST00000433250 979 ntBASIC14.73□□□□□ -0.05
LRFN1Q9P244 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.73□□□□□ -0.05
LRFN1Q9P244 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.73□□□□□ -0.05
LRFN1Q9P244 AC004461.2-201ENST00000629517 803 ntBASIC14.73□□□□□ -0.05
LRFN1Q9P244 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 AL691432.1-201ENST00000596308 1422 ntBASIC14.73□□□□□ -0.05
LRFN1Q9P244 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.73□□□□□ -0.05
LRFN1Q9P244 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LRFN1Q9P244 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LRFN1Q9P244 AGGF1P2-201ENST00000426656 2106 ntBASIC14.72□□□□□ -0.05
LRFN1Q9P244 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LRFN1Q9P244 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LRFN1Q9P244 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.72□□□□□ -0.05
LRFN1Q9P244 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LRFN1Q9P244 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.72□□□□□ -0.05
LRFN1Q9P244 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.72□□□□□ -0.05
LRFN1Q9P244 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LRFN1Q9P244 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LRFN1Q9P244 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LRFN1Q9P244 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LRFN1Q9P244 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LRFN1Q9P244 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms