Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 PRAL-201ENST00000624952 3286 ntBASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 SLC22A20-204ENST00000530038 1673 ntBASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 HCG4-201ENST00000418983 998 ntBASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 NMU-205ENST00000511469 756 ntTSL 3 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 TPM1-226ENST00000560959 925 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 PRR29-207ENST00000580752 458 ntTSL 3 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 RPS15-207ENST00000591032 550 ntTSL 3 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 RPS15-212ENST00000593052 629 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 AC020765.3-201ENST00000613051 740 ntBASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.92□□□□□ -0.18
CHMP1AQ9HD42 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 RPS15P9-201ENST00000494093 319 ntBASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 WT1-AS_2.1-201ENST00000613208 137 ntBASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 MIR1199-201ENST00000621445 119 ntBASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms