Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 RN7SL692P-201ENST00000464677 288 ntBASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 AC104794.3-201ENST00000566840 1248 ntBASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 CU639417.3-201ENST00000624240 1404 ntBASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 AC087499.6-201ENST00000411576 835 ntBASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 AC245100.5-201ENST00000452108 331 ntBASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 AC140912.1-201ENST00000577171 1054 ntBASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAIPQ9BWF2 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 AC008741.2-201ENST00000612792 3115 ntBASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 HIST3H2BA-201ENST00000436555 524 ntBASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 DOC2GP-202ENST00000514950 1163 ntBASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 SRD5A3P1-201ENST00000603021 949 ntBASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 AC004790.1-201ENST00000612686 536 ntBASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms