Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 AP002469.2-201ENST00000531724 424 ntBASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 ACTL9-202ENST00000612068 1252 ntBASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 AC112693.3-201ENST00000624819 1983 ntBASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 FAM185BP-201ENST00000443595 716 ntBASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28BQ9BUN5 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 MRPL20P1-201ENST00000400819 433 ntBASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CCDC28BQ9BUN5 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms