Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM56Q9BRZ2 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TRIM56Q9BRZ2 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM56Q9BRZ2 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM56Q9BRZ2 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM56Q9BRZ2 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM56Q9BRZ2 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM56Q9BRZ2 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AC092474.2-201ENST00000424288 719 ntBASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AC109635.5-201ENST00000533593 962 ntBASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AC145285.3-201ENST00000564603 959 ntBASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AL078644.1-201ENST00000609881 752 ntBASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AC073439.1-201ENST00000624121 1774 ntBASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 AL365209.1-201ENST00000624418 6473 ntBASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM56Q9BRZ2 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 MIR648-201ENST00000385046 94 ntBASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 MIR574-201ENST00000385209 96 ntBASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM56Q9BRZ2 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms