Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 HAUS4P1-201ENST00000406739 1145 ntBASIC15.57■□□□□ 0.08
LMX1AQ8TE12 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 TMEM14DP-201ENST00000422205 345 ntBASIC15.57■□□□□ 0.08
LMX1AQ8TE12 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 AC007389.4-201ENST00000454674 793 ntBASIC15.57■□□□□ 0.08
LMX1AQ8TE12 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 AC092552.1-201ENST00000547243 906 ntBASIC15.57■□□□□ 0.08
LMX1AQ8TE12 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 AC011676.5-201ENST00000624864 2660 ntBASIC15.57■□□□□ 0.08
LMX1AQ8TE12 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AC079776.1-201ENST00000401540 1152 ntBASIC15.56■□□□□ 0.08
LMX1AQ8TE12 RPL13P2-201ENST00000440687 659 ntBASIC15.56■□□□□ 0.08
LMX1AQ8TE12 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AC106886.1-201ENST00000568660 600 ntBASIC15.56■□□□□ 0.08
LMX1AQ8TE12 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AL158212.4-201ENST00000624062 1286 ntBASIC15.56■□□□□ 0.08
LMX1AQ8TE12 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1AQ8TE12 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 AC134407.2-201ENST00000625089 1978 ntBASIC15.55■□□□□ 0.08
LMX1AQ8TE12 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms