Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC54Q8NEL0 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AC016027.1-202ENST00000607927 1699 ntBASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AC010491.1-201ENST00000563101 2797 ntBASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AL450487.1-201ENST00000426799 995 ntBASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 IGHV3-22-201ENST00000520721 359 ntBASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AC002347.1-201ENST00000569543 541 ntBASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AC104692.2-201ENST00000603054 253 ntBASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AL031008.1-201ENST00000619963 541 ntBASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 WASH6P-202ENST00000359512 1437 ntBASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC54Q8NEL0 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 AL589702.1-201ENST00000641229 1509 ntBASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 CSF3-203ENST00000394148 622 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms