Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 AC093813.1-201ENST00000605066 256 ntBASIC13.12□□□□□ -0.31
VPS13CQ709C8 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 BNIP3P1-202ENST00000550043 1585 ntBASIC13.12□□□□□ -0.31
VPS13CQ709C8 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 AC005077.2-201ENST00000449786 690 ntBASIC13.12□□□□□ -0.31
VPS13CQ709C8 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VPS13CQ709C8 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
VPS13CQ709C8 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 AF254983.2-201ENST00000612331 135 ntBASIC13.11□□□□□ -0.31
VPS13CQ709C8 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 AP003680.1-201ENST00000598970 3660 ntBASIC13.11□□□□□ -0.31
VPS13CQ709C8 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 AL590640.2-201ENST00000457038 527 ntBASIC13.11□□□□□ -0.31
VPS13CQ709C8 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 AP006547.1-201ENST00000563435 692 ntBASIC13.11□□□□□ -0.31
VPS13CQ709C8 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 AL138709.1-201ENST00000614840 1693 ntBASIC13.11□□□□□ -0.31
VPS13CQ709C8 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 SPTLC1P5-201ENST00000450718 252 ntBASIC13.11□□□□□ -0.31
VPS13CQ709C8 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.11□□□□□ -0.31
VPS13CQ709C8 RN7SL48P-201ENST00000579283 293 ntBASIC13.11□□□□□ -0.31
VPS13CQ709C8 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 AL451050.2-201ENST00000606967 682 ntBASIC13.11□□□□□ -0.31
VPS13CQ709C8 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.11□□□□□ -0.31
VPS13CQ709C8 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS13CQ709C8 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC13.1□□□□□ -0.31
VPS13CQ709C8 FO393414.2-201ENST00000405153 598 ntBASIC13.1□□□□□ -0.31
VPS13CQ709C8 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.1□□□□□ -0.31
VPS13CQ709C8 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.1□□□□□ -0.31
VPS13CQ709C8 SCARNA20.5-201ENST00000516991 142 ntBASIC13.1□□□□□ -0.31
VPS13CQ709C8 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
VPS13CQ709C8 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC13.1□□□□□ -0.31
VPS13CQ709C8 AC145423.3-201ENST00000615987 467 ntBASIC13.1□□□□□ -0.31
VPS13CQ709C8 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
VPS13CQ709C8 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS13CQ709C8 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS13CQ709C8 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.1□□□□□ -0.31
VPS13CQ709C8 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC13.1□□□□□ -0.31
VPS13CQ709C8 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS13CQ709C8 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms