Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.82■□□□□ 0.12
PKNOX1P55347 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PKNOX1P55347 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.82■□□□□ 0.12
PKNOX1P55347 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.82■□□□□ 0.12
PKNOX1P55347 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.82■□□□□ 0.12
PKNOX1P55347 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.82■□□□□ 0.12
PKNOX1P55347 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.82■□□□□ 0.12
PKNOX1P55347 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.82■□□□□ 0.12
PKNOX1P55347 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 AC016027.1-202ENST00000607927 1699 ntBASIC15.82■□□□□ 0.12
PKNOX1P55347 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.82■□□□□ 0.12
PKNOX1P55347 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.82■□□□□ 0.12
PKNOX1P55347 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.82■□□□□ 0.12
PKNOX1P55347 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
PKNOX1P55347 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.82■□□□□ 0.12
PKNOX1P55347 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.82■□□□□ 0.12
PKNOX1P55347 AC136621.1-201ENST00000624017 2304 ntBASIC15.82■□□□□ 0.12
PKNOX1P55347 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PKNOX1P55347 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PKNOX1P55347 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.81■□□□□ 0.12
PKNOX1P55347 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.81■□□□□ 0.12
PKNOX1P55347 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.81■□□□□ 0.12
PKNOX1P55347 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PKNOX1P55347 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PKNOX1P55347 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PKNOX1P55347 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.81■□□□□ 0.12
PKNOX1P55347 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PKNOX1P55347 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.81■□□□□ 0.12
PKNOX1P55347 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.81■□□□□ 0.12
PKNOX1P55347 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.81■□□□□ 0.12
PKNOX1P55347 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.81■□□□□ 0.12
PKNOX1P55347 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.81■□□□□ 0.12
PKNOX1P55347 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.81■□□□□ 0.12
PKNOX1P55347 AC079776.4-201ENST00000511039 504 ntBASIC15.81■□□□□ 0.12
PKNOX1P55347 RNA5SP419-201ENST00000515908 135 ntBASIC15.81■□□□□ 0.12
PKNOX1P55347 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.81■□□□□ 0.12
PKNOX1P55347 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PKNOX1P55347 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PKNOX1P55347 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.81■□□□□ 0.12
PKNOX1P55347 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.81■□□□□ 0.12
PKNOX1P55347 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.81■□□□□ 0.12
PKNOX1P55347 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.81■□□□□ 0.12
PKNOX1P55347 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PKNOX1P55347 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 SSR4P1-203ENST00000599569 2260 ntBASIC15.8■□□□□ 0.12
PKNOX1P55347 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.8■□□□□ 0.12
PKNOX1P55347 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.8■□□□□ 0.12
PKNOX1P55347 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.8■□□□□ 0.12
PKNOX1P55347 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.8■□□□□ 0.12
PKNOX1P55347 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.8■□□□□ 0.12
PKNOX1P55347 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PKNOX1P55347 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PKNOX1P55347 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PKNOX1P55347 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.8■□□□□ 0.12
PKNOX1P55347 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 AC140658.5-201ENST00000438532 169 ntBASIC15.8■□□□□ 0.12
PKNOX1P55347 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PKNOX1P55347 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.8■□□□□ 0.12
PKNOX1P55347 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.8■□□□□ 0.12
PKNOX1P55347 AL662844.1-201ENST00000546340 181 ntBASIC15.8■□□□□ 0.12
PKNOX1P55347 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.8■□□□□ 0.12
PKNOX1P55347 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.8■□□□□ 0.12
PKNOX1P55347 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
PKNOX1P55347 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.8■□□□□ 0.12
PKNOX1P55347 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms