Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CDH11P55287 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 AP003680.1-201ENST00000598970 3660 ntBASIC14.79□□□□□ -0.04
CDH11P55287 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
CDH11P55287 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.79□□□□□ -0.04
CDH11P55287 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CDH11P55287 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.79□□□□□ -0.04
CDH11P55287 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.79□□□□□ -0.04
CDH11P55287 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.79□□□□□ -0.04
CDH11P55287 ALG1L5P-201ENST00000482043 771 ntBASIC14.79□□□□□ -0.04
CDH11P55287 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC14.79□□□□□ -0.04
CDH11P55287 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
CDH11P55287 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.79□□□□□ -0.04
CDH11P55287 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.79□□□□□ -0.04
CDH11P55287 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.79□□□□□ -0.04
CDH11P55287 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.79□□□□□ -0.04
CDH11P55287 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.79□□□□□ -0.04
CDH11P55287 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.79□□□□□ -0.04
CDH11P55287 AC005829.1-201ENST00000570002 483 ntBASIC14.79□□□□□ -0.04
CDH11P55287 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.79□□□□□ -0.04
CDH11P55287 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
CDH11P55287 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.79□□□□□ -0.04
CDH11P55287 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.79□□□□□ -0.04
CDH11P55287 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.79□□□□□ -0.04
CDH11P55287 AL078644.1-201ENST00000609881 752 ntBASIC14.79□□□□□ -0.04
CDH11P55287 AL161772.1-201ENST00000610494 4412 ntBASIC14.79□□□□□ -0.04
CDH11P55287 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CDH11P55287 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.79□□□□□ -0.04
CDH11P55287 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDH11P55287 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.79□□□□□ -0.04
CDH11P55287 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.78□□□□□ -0.04
CDH11P55287 AL592424.1-201ENST00000563624 1536 ntBASIC14.78□□□□□ -0.04
CDH11P55287 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CDH11P55287 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.78□□□□□ -0.04
CDH11P55287 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.78□□□□□ -0.04
CDH11P55287 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.78□□□□□ -0.04
CDH11P55287 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.78□□□□□ -0.04
CDH11P55287 PDPK2P-202ENST00000562415 1191 ntBASIC14.78□□□□□ -0.04
CDH11P55287 OR7E47P-204ENST00000575924 449 ntBASIC14.78□□□□□ -0.04
CDH11P55287 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.78□□□□□ -0.04
CDH11P55287 AP001160.2-201ENST00000596071 487 ntBASIC14.78□□□□□ -0.04
CDH11P55287 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 AC004877.2-201ENST00000623941 599 ntBASIC14.78□□□□□ -0.04
CDH11P55287 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.78□□□□□ -0.04
CDH11P55287 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
CDH11P55287 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CDH11P55287 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
CDH11P55287 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CDH11P55287 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
CDH11P55287 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CDH11P55287 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
CDH11P55287 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH11P55287 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH11P55287 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms