Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.86■□□□□ 0.29
COL4A4P53420 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.86■□□□□ 0.29
COL4A4P53420 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL4A4P53420 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.86■□□□□ 0.29
COL4A4P53420 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.86■□□□□ 0.29
COL4A4P53420 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.86■□□□□ 0.29
COL4A4P53420 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.85■□□□□ 0.29
COL4A4P53420 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.85■□□□□ 0.29
COL4A4P53420 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.85■□□□□ 0.29
COL4A4P53420 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.85■□□□□ 0.29
COL4A4P53420 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.85■□□□□ 0.29
COL4A4P53420 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 ENPP7P5-201ENST00000541031 1031 ntBASIC16.85■□□□□ 0.29
COL4A4P53420 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 AC025279.2-201ENST00000569730 653 ntBASIC16.85■□□□□ 0.29
COL4A4P53420 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.85■□□□□ 0.29
COL4A4P53420 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 AC138951.2-201ENST00000623455 1161 ntBASIC16.85■□□□□ 0.29
COL4A4P53420 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
COL4A4P53420 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL4A4P53420 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.85■□□□□ 0.29
COL4A4P53420 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
COL4A4P53420 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
COL4A4P53420 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.85■□□□□ 0.29
COL4A4P53420 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.85■□□□□ 0.29
COL4A4P53420 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL4A4P53420 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.85■□□□□ 0.29
COL4A4P53420 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.85■□□□□ 0.29
COL4A4P53420 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL4A4P53420 AC069224.1-201ENST00000566372 1715 ntBASIC16.84■□□□□ 0.29
COL4A4P53420 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
COL4A4P53420 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.84■□□□□ 0.29
COL4A4P53420 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
COL4A4P53420 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL4A4P53420 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.84■□□□□ 0.29
COL4A4P53420 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 UPF3AP2-201ENST00000457924 1132 ntBASIC16.84■□□□□ 0.29
COL4A4P53420 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.84■□□□□ 0.29
COL4A4P53420 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.84■□□□□ 0.29
COL4A4P53420 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.84■□□□□ 0.29
COL4A4P53420 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.84■□□□□ 0.29
COL4A4P53420 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.84■□□□□ 0.29
COL4A4P53420 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.84■□□□□ 0.29
COL4A4P53420 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.84■□□□□ 0.29
COL4A4P53420 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL4A4P53420 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL4A4P53420 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL4A4P53420 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.83■□□□□ 0.29
COL4A4P53420 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL4A4P53420 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.83■□□□□ 0.29
COL4A4P53420 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL4A4P53420 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
COL4A4P53420 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL4A4P53420 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.83■□□□□ 0.29
COL4A4P53420 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.83■□□□□ 0.28
COL4A4P53420 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms