Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.18■□□□□ 0.02
RFX3P48380 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.18■□□□□ 0.02
RFX3P48380 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.17■□□□□ 0.02
RFX3P48380 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RFX3P48380 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
RFX3P48380 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX3P48380 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX3P48380 DNAJB3-201ENST00000446806 729 ntBASIC15.17■□□□□ 0.02
RFX3P48380 SPDYE11-202ENST00000450699 704 ntBASIC15.17■□□□□ 0.02
RFX3P48380 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX3P48380 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.17■□□□□ 0.02
RFX3P48380 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
RFX3P48380 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 SPDYE9P-201ENST00000570642 692 ntBASIC15.17■□□□□ 0.02
RFX3P48380 MIR3687-2-201ENST00000577708 61 ntBASIC15.17■□□□□ 0.02
RFX3P48380 SPDYE10P-202ENST00000612005 668 ntBASIC15.17■□□□□ 0.02
RFX3P48380 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 SPDYE8P-202ENST00000612377 668 ntBASIC15.17■□□□□ 0.02
RFX3P48380 MIR3687-1-201ENST00000614492 61 ntBASIC15.17■□□□□ 0.02
RFX3P48380 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.17■□□□□ 0.02
RFX3P48380 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX3P48380 AP002414.2-201ENST00000591780 3365 ntBASIC15.17■□□□□ 0.02
RFX3P48380 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX3P48380 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
RFX3P48380 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX3P48380 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RFX3P48380 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
RFX3P48380 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
RFX3P48380 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.16■□□□□ 0.02
RFX3P48380 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms