Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CDX1P47902 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CDX1P47902 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CDX1P47902 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
CDX1P47902 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CDX1P47902 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CDX1P47902 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CDX1P47902 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
CDX1P47902 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CDX1P47902 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.21□□□□□ -0.3
CDX1P47902 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CDX1P47902 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
CDX1P47902 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CDX1P47902 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.21□□□□□ -0.3
CDX1P47902 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 BCAR1-209ENST00000546196 1340 ntBASIC13.2□□□□□ -0.3
CDX1P47902 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
CDX1P47902 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.2□□□□□ -0.3
CDX1P47902 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.2□□□□□ -0.3
CDX1P47902 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.2□□□□□ -0.3
CDX1P47902 GPX1P2-201ENST00000429271 606 ntBASIC13.2□□□□□ -0.3
CDX1P47902 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC13.2□□□□□ -0.3
CDX1P47902 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.2□□□□□ -0.3
CDX1P47902 SLC25A6P2-201ENST00000497974 877 ntBASIC13.2□□□□□ -0.3
CDX1P47902 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.2□□□□□ -0.3
CDX1P47902 PDPK2P-202ENST00000562415 1191 ntBASIC13.2□□□□□ -0.3
CDX1P47902 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.2□□□□□ -0.3
CDX1P47902 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
CDX1P47902 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC13.2□□□□□ -0.3
CDX1P47902 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.2□□□□□ -0.3
CDX1P47902 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CDX1P47902 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CDX1P47902 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.19□□□□□ -0.3
CDX1P47902 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.19□□□□□ -0.3
CDX1P47902 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.19□□□□□ -0.3
CDX1P47902 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 AC074386.1-202ENST00000463561 864 ntBASIC13.19□□□□□ -0.3
CDX1P47902 AC112482.1-201ENST00000492080 688 ntBASIC13.19□□□□□ -0.3
CDX1P47902 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.19□□□□□ -0.3
CDX1P47902 KRT19P2-202ENST00000557173 1012 ntBASIC13.19□□□□□ -0.3
CDX1P47902 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.19□□□□□ -0.3
CDX1P47902 AC010327.4-202ENST00000591484 748 ntBASIC13.19□□□□□ -0.3
CDX1P47902 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC13.19□□□□□ -0.3
CDX1P47902 C20orf181-201ENST00000623918 480 ntBASIC13.19□□□□□ -0.3
CDX1P47902 AC092865.6-201ENST00000642101 219 ntBASIC13.19□□□□□ -0.3
CDX1P47902 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CDX1P47902 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
CDX1P47902 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.19□□□□□ -0.3
CDX1P47902 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CDX1P47902 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.19□□□□□ -0.3
CDX1P47902 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.19□□□□□ -0.3
CDX1P47902 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms