Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC236430.1-201ENST00000402231 743 ntBASIC18.31■□□□□ 0.52
SMARCA1P28370 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.31■□□□□ 0.52
SMARCA1P28370 MEP1AP4-201ENST00000423244 1087 ntBASIC18.31■□□□□ 0.52
SMARCA1P28370 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.31■□□□□ 0.52
SMARCA1P28370 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.31■□□□□ 0.52
SMARCA1P28370 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.31■□□□□ 0.52
SMARCA1P28370 SLED1-202ENST00000512051 380 ntBASIC18.31■□□□□ 0.52
SMARCA1P28370 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.31■□□□□ 0.52
SMARCA1P28370 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
SMARCA1P28370 LINC01115-203ENST00000606068 577 ntBASIC18.31■□□□□ 0.52
SMARCA1P28370 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMARCA1P28370 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SMARCA1P28370 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.31■□□□□ 0.52
SMARCA1P28370 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SMARCA1P28370 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMARCA1P28370 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SMARCA1P28370 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SMARCA1P28370 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMARCA1P28370 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SMARCA1P28370 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.31■□□□□ 0.52
SMARCA1P28370 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.3■□□□□ 0.52
SMARCA1P28370 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.3■□□□□ 0.52
SMARCA1P28370 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.3■□□□□ 0.52
SMARCA1P28370 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SMARCA1P28370 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
SMARCA1P28370 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 AP005117.1-202ENST00000581724 1908 ntBASIC18.3■□□□□ 0.52
SMARCA1P28370 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.3■□□□□ 0.52
SMARCA1P28370 SPDYE18-201ENST00000510091 1050 ntBASIC18.3■□□□□ 0.52
SMARCA1P28370 DOC2GP-202ENST00000514950 1163 ntBASIC18.3■□□□□ 0.52
SMARCA1P28370 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.3■□□□□ 0.52
SMARCA1P28370 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.3■□□□□ 0.52
SMARCA1P28370 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.3■□□□□ 0.52
SMARCA1P28370 AL391069.4-201ENST00000609583 481 ntBASIC18.3■□□□□ 0.52
SMARCA1P28370 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.3■□□□□ 0.52
SMARCA1P28370 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 PCDHA1-201ENST00000378133 2726 ntBASIC18.3■□□□□ 0.52
SMARCA1P28370 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.3■□□□□ 0.52
SMARCA1P28370 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
SMARCA1P28370 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.3■□□□□ 0.52
SMARCA1P28370 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.3■□□□□ 0.52
SMARCA1P28370 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMARCA1P28370 AC011270.2-201ENST00000624293 2550 ntBASIC18.3■□□□□ 0.52
SMARCA1P28370 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
SMARCA1P28370 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 AC138969.3-201ENST00000546612 1459 ntBASIC18.29■□□□□ 0.52
SMARCA1P28370 AC138932.2-201ENST00000548268 1459 ntBASIC18.29■□□□□ 0.52
SMARCA1P28370 AC126755.4-201ENST00000549796 1459 ntBASIC18.29■□□□□ 0.52
SMARCA1P28370 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.29■□□□□ 0.52
SMARCA1P28370 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SMARCA1P28370 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.29■□□□□ 0.52
SMARCA1P28370 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.29■□□□□ 0.52
SMARCA1P28370 AC104794.3-201ENST00000566840 1248 ntBASIC18.29■□□□□ 0.52
SMARCA1P28370 AC004790.1-201ENST00000612686 536 ntBASIC18.29■□□□□ 0.52
SMARCA1P28370 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
SMARCA1P28370 AF228730.6-201ENST00000641497 218 ntBASIC18.29■□□□□ 0.52
SMARCA1P28370 AC084121.3-201ENST00000641716 218 ntBASIC18.29■□□□□ 0.52
SMARCA1P28370 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.29■□□□□ 0.52
SMARCA1P28370 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.29■□□□□ 0.52
SMARCA1P28370 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SMARCA1P28370 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMARCA1P28370 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.29■□□□□ 0.52
SMARCA1P28370 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms