Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 AC093525.9-201ENST00000624961 1746 ntBASIC13.99□□□□□ -0.17
COL8A1P27658 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC13.99□□□□□ -0.17
COL8A1P27658 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC13.99□□□□□ -0.17
COL8A1P27658 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL8A1P27658 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 AL662890.1-201ENST00000396818 632 ntBASIC13.99□□□□□ -0.17
COL8A1P27658 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.99□□□□□ -0.17
COL8A1P27658 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.99□□□□□ -0.17
COL8A1P27658 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC13.99□□□□□ -0.17
COL8A1P27658 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.99□□□□□ -0.17
COL8A1P27658 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.99□□□□□ -0.17
COL8A1P27658 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC13.99□□□□□ -0.17
COL8A1P27658 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC13.99□□□□□ -0.17
COL8A1P27658 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.99□□□□□ -0.17
COL8A1P27658 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.99□□□□□ -0.17
COL8A1P27658 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.99□□□□□ -0.17
COL8A1P27658 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
COL8A1P27658 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
COL8A1P27658 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC13.99□□□□□ -0.17
COL8A1P27658 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL8A1P27658 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL8A1P27658 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
COL8A1P27658 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
COL8A1P27658 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
COL8A1P27658 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL8A1P27658 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 AC099398.1-201ENST00000567919 2776 ntBASIC13.98□□□□□ -0.17
COL8A1P27658 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 AC104457.1-201ENST00000401024 814 ntBASIC13.98□□□□□ -0.17
COL8A1P27658 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
COL8A1P27658 AL139010.1-201ENST00000454878 894 ntBASIC13.98□□□□□ -0.17
COL8A1P27658 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.98□□□□□ -0.17
COL8A1P27658 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.98□□□□□ -0.17
COL8A1P27658 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 AC079316.1-201ENST00000548397 411 ntBASIC13.98□□□□□ -0.17
COL8A1P27658 HNRNPUP1-201ENST00000554987 333 ntBASIC13.98□□□□□ -0.17
COL8A1P27658 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
COL8A1P27658 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC13.98□□□□□ -0.17
COL8A1P27658 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.98□□□□□ -0.17
COL8A1P27658 AC008686.1-203ENST00000591826 463 ntTSL 2 BASIC13.98□□□□□ -0.17
COL8A1P27658 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.98□□□□□ -0.17
COL8A1P27658 SIGLEC29P-201ENST00000599873 1114 ntBASIC13.98□□□□□ -0.17
COL8A1P27658 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 AL589702.1-201ENST00000641229 1509 ntBASIC13.98□□□□□ -0.17
COL8A1P27658 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
COL8A1P27658 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC13.98□□□□□ -0.17
COL8A1P27658 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC13.98□□□□□ -0.17
COL8A1P27658 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms