Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
VIMP08670 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VIMP08670 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC16.22■□□□□ 0.19
VIMP08670 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.22■□□□□ 0.19
VIMP08670 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.22■□□□□ 0.19
VIMP08670 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
VIMP08670 AC126335.2-201ENST00000623362 4637 ntBASIC16.22■□□□□ 0.19
VIMP08670 RDX-218ENST00000544551 4117 ntTSL 2 BASIC16.21■□□□□ 0.19
VIMP08670 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.21■□□□□ 0.19
VIMP08670 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
VIMP08670 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 INTS4P1-201ENST00000438455 1935 ntBASIC16.21■□□□□ 0.19
VIMP08670 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 RNF152P1-201ENST00000397754 604 ntBASIC16.21■□□□□ 0.19
VIMP08670 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
VIMP08670 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.21■□□□□ 0.19
VIMP08670 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.21■□□□□ 0.19
VIMP08670 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.21■□□□□ 0.19
VIMP08670 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 C18orf15-201ENST00000623680 2534 ntBASIC16.21■□□□□ 0.19
VIMP08670 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.21■□□□□ 0.19
VIMP08670 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
VIMP08670 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VIMP08670 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VIMP08670 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VIMP08670 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
VIMP08670 AL390755.1-201ENST00000623716 2027 ntBASIC16.21■□□□□ 0.18
VIMP08670 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VIMP08670 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
VIMP08670 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
VIMP08670 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
VIMP08670 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.2■□□□□ 0.18
VIMP08670 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.2■□□□□ 0.18
VIMP08670 AC112693.3-201ENST00000624819 1983 ntBASIC16.2■□□□□ 0.18
VIMP08670 SIGLEC16-201ENST00000599858 1437 ntBASIC16.2■□□□□ 0.18
VIMP08670 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
VIMP08670 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.2■□□□□ 0.18
VIMP08670 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.2■□□□□ 0.18
VIMP08670 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.2■□□□□ 0.18
VIMP08670 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.2■□□□□ 0.18
VIMP08670 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.2■□□□□ 0.18
VIMP08670 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.2■□□□□ 0.18
VIMP08670 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.2■□□□□ 0.18
VIMP08670 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.2■□□□□ 0.18
VIMP08670 AC066615.1-201ENST00000640911 628 ntBASIC16.2■□□□□ 0.18
VIMP08670 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VIMP08670 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms