Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
RNF40O75150 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
RNF40O75150 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
RNF40O75150 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.42■□□□□ 0.38
RNF40O75150 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
RNF40O75150 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.42■□□□□ 0.38
RNF40O75150 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.42■□□□□ 0.38
RNF40O75150 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF40O75150 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
RNF40O75150 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
RNF40O75150 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
RNF40O75150 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.42■□□□□ 0.38
RNF40O75150 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.42■□□□□ 0.38
RNF40O75150 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.42■□□□□ 0.38
RNF40O75150 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.42■□□□□ 0.38
RNF40O75150 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF40O75150 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
RNF40O75150 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF40O75150 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.42■□□□□ 0.38
RNF40O75150 AC129492.6-201ENST00000611383 1305 ntBASIC17.42■□□□□ 0.38
RNF40O75150 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
RNF40O75150 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF40O75150 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.41■□□□□ 0.38
RNF40O75150 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.41■□□□□ 0.38
RNF40O75150 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
RNF40O75150 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 FAM86GP-201ENST00000448322 971 ntBASIC17.41■□□□□ 0.38
RNF40O75150 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.41■□□□□ 0.38
RNF40O75150 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RNF40O75150 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.41■□□□□ 0.38
RNF40O75150 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
RNF40O75150 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RNF40O75150 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF40O75150 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
RNF40O75150 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF40O75150 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF40O75150 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RNF40O75150 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF40O75150 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF40O75150 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF40O75150 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF40O75150 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
RNF40O75150 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF40O75150 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
RNF40O75150 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
RNF40O75150 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RNF40O75150 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF40O75150 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
RNF40O75150 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF40O75150 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF40O75150 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF40O75150 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF40O75150 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF40O75150 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms