Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 GUSBP12-201ENST00000513727 720 ntBASIC16.11■□□□□ 0.17
SHOX2O60902 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
SHOX2O60902 HYMAI.1-201ENST00000620949 238 ntBASIC16.11■□□□□ 0.17
SHOX2O60902 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.11■□□□□ 0.17
SHOX2O60902 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SHOX2O60902 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC16.11■□□□□ 0.17
SHOX2O60902 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.11■□□□□ 0.17
SHOX2O60902 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.11■□□□□ 0.17
SHOX2O60902 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.11■□□□□ 0.17
SHOX2O60902 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.11■□□□□ 0.17
SHOX2O60902 WASH6P-202ENST00000359512 1437 ntBASIC16.11■□□□□ 0.17
SHOX2O60902 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHOX2O60902 NCF1C-201ENST00000438382 1427 ntBASIC16.11■□□□□ 0.17
SHOX2O60902 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SHOX2O60902 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.1■□□□□ 0.17
SHOX2O60902 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.1■□□□□ 0.17
SHOX2O60902 GALC-206ENST00000544807 2528 ntTSL 2 BASIC16.1■□□□□ 0.17
SHOX2O60902 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.1■□□□□ 0.17
SHOX2O60902 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SHOX2O60902 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.1■□□□□ 0.17
SHOX2O60902 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 PAWRP1-201ENST00000451083 565 ntBASIC16.1■□□□□ 0.17
SHOX2O60902 AC245100.5-201ENST00000452108 331 ntBASIC16.1■□□□□ 0.17
SHOX2O60902 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.1■□□□□ 0.17
SHOX2O60902 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.1■□□□□ 0.17
SHOX2O60902 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.1■□□□□ 0.17
SHOX2O60902 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.1■□□□□ 0.17
SHOX2O60902 LINC01023-201ENST00000606054 436 ntBASIC16.1■□□□□ 0.17
SHOX2O60902 AC012306.2-201ENST00000609350 630 ntBASIC16.1■□□□□ 0.17
SHOX2O60902 AC006011.2-201ENST00000621313 1158 ntBASIC16.1■□□□□ 0.17
SHOX2O60902 AL356585.2-201ENST00000625078 2396 ntBASIC16.1■□□□□ 0.17
SHOX2O60902 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.1■□□□□ 0.17
SHOX2O60902 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.1■□□□□ 0.17
SHOX2O60902 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.1■□□□□ 0.17
SHOX2O60902 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.1■□□□□ 0.17
SHOX2O60902 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SHOX2O60902 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 AC089987.1-201ENST00000551654 2209 ntBASIC16.1■□□□□ 0.17
SHOX2O60902 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SHOX2O60902 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHOX2O60902 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC16.09■□□□□ 0.17
SHOX2O60902 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SHOX2O60902 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SHOX2O60902 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC16.09■□□□□ 0.17
SHOX2O60902 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SHOX2O60902 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC16.09■□□□□ 0.17
SHOX2O60902 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SHOX2O60902 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 RNF152P1-201ENST00000397754 604 ntBASIC16.09■□□□□ 0.17
SHOX2O60902 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.09■□□□□ 0.17
SHOX2O60902 SPDYE13P-201ENST00000445314 798 ntBASIC16.09■□□□□ 0.17
SHOX2O60902 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.09■□□□□ 0.17
SHOX2O60902 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.09■□□□□ 0.17
SHOX2O60902 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.09■□□□□ 0.17
SHOX2O60902 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.09■□□□□ 0.17
SHOX2O60902 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SHOX2O60902 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHOX2O60902 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms