Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AC007191.1-201ENST00000623179 2995 ntBASIC11.81□□□□□ -0.52
SMKR1H3BMG3 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 LINC01101-201ENST00000622953 1884 ntBASIC11.8□□□□□ -0.52
SMKR1H3BMG3 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 AC090616.6-203ENST00000579186 1945 ntBASIC11.8□□□□□ -0.52
SMKR1H3BMG3 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 ZEB1-AS1-208ENST00000607166 2503 ntBASIC11.8□□□□□ -0.52
SMKR1H3BMG3 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 CCS-201ENST00000310190 942 ntTSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 CDK2AP2P3-201ENST00000422476 372 ntBASIC11.8□□□□□ -0.52
SMKR1H3BMG3 KRT18P57-201ENST00000443599 1254 ntBASIC11.8□□□□□ -0.52
SMKR1H3BMG3 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 KRT8P26-201ENST00000534154 1276 ntBASIC11.8□□□□□ -0.52
SMKR1H3BMG3 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 AC091167.2-201ENST00000579581 588 ntBASIC11.8□□□□□ -0.52
SMKR1H3BMG3 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 BNIP3P18-201ENST00000593976 575 ntBASIC11.8□□□□□ -0.52
SMKR1H3BMG3 AC064862.7-201ENST00000604520 867 ntBASIC11.8□□□□□ -0.52
SMKR1H3BMG3 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC11.8□□□□□ -0.52
SMKR1H3BMG3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 NCF1C-201ENST00000438382 1427 ntBASIC11.79□□□□□ -0.52
SMKR1H3BMG3 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SMKR1H3BMG3 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms