Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 U1.21-201ENST00000580816 167 ntBASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 AC021097.1-201ENST00000607902 574 ntBASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 AC010507.1-201ENST00000633895 436 ntBASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 FLJ16779-201ENST00000612722 7638 ntBASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC39Q9UFE4 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 PMS2P4-201ENST00000412466 1052 ntBASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 RPL13AP23-201ENST00000480739 586 ntBASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 AC034105.1-201ENST00000563488 319 ntBASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 MIR3909-201ENST00000579518 119 ntBASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 AC023141.13-201ENST00000604991 943 ntBASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 AL031055.1-201ENST00000606362 631 ntBASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 IL9RP2-201ENST00000423948 1312 ntBASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC39Q9UFE4 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 POU5F1P6-201ENST00000466990 990 ntBASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 AC023908.3-201ENST00000564211 3047 ntBASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms