Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 KRT18P32-201ENST00000424695 1287 ntBASIC17.2■□□□□ 0.34
SIX2Q9NPC8 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 SPDYE14P-201ENST00000442619 822 ntBASIC17.2■□□□□ 0.34
SIX2Q9NPC8 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 HNRNPUP1-201ENST00000554987 333 ntBASIC17.2■□□□□ 0.34
SIX2Q9NPC8 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 AL450472.2-201ENST00000603663 1156 ntBASIC17.2■□□□□ 0.34
SIX2Q9NPC8 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 AC103702.1-201ENST00000548801 2630 ntBASIC17.2■□□□□ 0.34
SIX2Q9NPC8 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SIX2Q9NPC8 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 AZGP1P1-201ENST00000411909 902 ntBASIC17.19■□□□□ 0.34
SIX2Q9NPC8 UPF3AP3-201ENST00000420996 769 ntBASIC17.19■□□□□ 0.34
SIX2Q9NPC8 BX842568.4-201ENST00000421222 227 ntBASIC17.19■□□□□ 0.34
SIX2Q9NPC8 PHKG1P2-201ENST00000457537 863 ntBASIC17.19■□□□□ 0.34
SIX2Q9NPC8 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.19■□□□□ 0.34
SIX2Q9NPC8 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 AP000344.2-201ENST00000512987 629 ntBASIC17.18■□□□□ 0.34
SIX2Q9NPC8 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 AC105021.1-202ENST00000570572 669 ntBASIC17.18■□□□□ 0.34
SIX2Q9NPC8 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms