Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 AC136632.2-201ENST00000512891 861 ntBASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 AC106881.1-201ENST00000605849 3329 ntBASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 AC005252.3-201ENST00000623855 2258 ntBASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 AP001282.1-201ENST00000531301 1499 ntBASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 HMGA1P7-201ENST00000406908 502 ntBASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 AC067930.6-201ENST00000623257 4947 ntBASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28BQ9BUN5 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28BQ9BUN5 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms