Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 EEF1DP4-201ENST00000446006 880 ntBASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 AC104596.2-201ENST00000512793 793 ntBASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 AL033527.5-201ENST00000641382 801 ntBASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 POU5F1P6-201ENST00000466990 990 ntBASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 AC092552.1-201ENST00000547243 906 ntBASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 AL391069.4-201ENST00000609583 481 ntBASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.19■□□□□ 0.5
SYNGAP1Q96PV0 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 CLK3P2-201ENST00000427566 1453 ntBASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 CDC14C-201ENST00000428251 1719 ntBASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 AC234783.1-201ENST00000441761 496 ntBASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 AC008735.3-201ENST00000596646 500 ntBASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.18■□□□□ 0.5
SYNGAP1Q96PV0 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms