Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 FO538757.1-201ENST00000623083 1397 ntBASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 AC097493.3-201ENST00000509725 367 ntBASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 AC027369.6-201ENST00000525520 931 ntBASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 BANF1P1-201ENST00000553684 263 ntBASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 AL158211.3-201ENST00000607385 239 ntBASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 AL589739.1-201ENST00000607720 493 ntBASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.18■□□□□ 0.02
PTCHD1Q96NR3 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 AL513523.2-202ENST00000427283 2040 ntBASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 CETN4P-206ENST00000642099 2168 ntBASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 AC245100.5-201ENST00000452108 331 ntBASIC15.17■□□□□ 0.02
PTCHD1Q96NR3 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms