Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 AC005237.2-201ENST00000434368 219 ntBASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC116Q8IYX3 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.21■□□□□ 0.02
CCDC116Q8IYX3 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC116Q8IYX3 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.21■□□□□ 0.02
CCDC116Q8IYX3 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC116Q8IYX3 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.02
CCDC116Q8IYX3 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC116Q8IYX3 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC116Q8IYX3 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 FAM220BP-201ENST00000377689 816 ntBASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 AC004461.1-201ENST00000412461 403 ntBASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 HYMAI-201ENST00000635591 3347 ntBASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC116Q8IYX3 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 AP005117.1-202ENST00000581724 1908 ntBASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 AC211486.1-202ENST00000416371 468 ntBASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 AC211476.1-201ENST00000503899 468 ntBASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 AL513210.1-201ENST00000629608 234 ntBASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms