Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.34■□□□□ 0.21
USP39Q53GS9 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.34■□□□□ 0.21
USP39Q53GS9 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.34■□□□□ 0.21
USP39Q53GS9 MIR6069-201ENST00000620069 79 ntBASIC16.34■□□□□ 0.21
USP39Q53GS9 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.34■□□□□ 0.21
USP39Q53GS9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
USP39Q53GS9 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
USP39Q53GS9 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
USP39Q53GS9 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
USP39Q53GS9 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USP39Q53GS9 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.34■□□□□ 0.21
USP39Q53GS9 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
USP39Q53GS9 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.34■□□□□ 0.21
USP39Q53GS9 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
USP39Q53GS9 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.34■□□□□ 0.21
USP39Q53GS9 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
USP39Q53GS9 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.34■□□□□ 0.21
USP39Q53GS9 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
USP39Q53GS9 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
USP39Q53GS9 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USP39Q53GS9 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USP39Q53GS9 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
USP39Q53GS9 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
USP39Q53GS9 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
USP39Q53GS9 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
USP39Q53GS9 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
USP39Q53GS9 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
USP39Q53GS9 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
USP39Q53GS9 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.33■□□□□ 0.21
USP39Q53GS9 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
USP39Q53GS9 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
USP39Q53GS9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
USP39Q53GS9 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
USP39Q53GS9 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
USP39Q53GS9 AC008894.3-201ENST00000624324 3103 ntBASIC16.33■□□□□ 0.21
USP39Q53GS9 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.33■□□□□ 0.21
USP39Q53GS9 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
USP39Q53GS9 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.33■□□□□ 0.2
USP39Q53GS9 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.33■□□□□ 0.2
USP39Q53GS9 AC079776.1-201ENST00000401540 1152 ntBASIC16.33■□□□□ 0.2
USP39Q53GS9 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.33■□□□□ 0.2
USP39Q53GS9 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.33■□□□□ 0.2
USP39Q53GS9 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.33■□□□□ 0.2
USP39Q53GS9 AP002490.2-201ENST00000524791 560 ntBASIC16.33■□□□□ 0.2
USP39Q53GS9 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.33■□□□□ 0.2
USP39Q53GS9 WASH4P-201ENST00000564273 1246 ntBASIC16.33■□□□□ 0.2
USP39Q53GS9 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.33■□□□□ 0.2
USP39Q53GS9 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
USP39Q53GS9 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.33■□□□□ 0.2
USP39Q53GS9 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.33■□□□□ 0.2
USP39Q53GS9 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
USP39Q53GS9 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.33■□□□□ 0.2
USP39Q53GS9 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.33■□□□□ 0.2
USP39Q53GS9 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.33■□□□□ 0.2
USP39Q53GS9 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
USP39Q53GS9 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
USP39Q53GS9 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USP39Q53GS9 DOC2GP-204ENST00000639052 2548 ntBASIC16.33■□□□□ 0.2
USP39Q53GS9 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
USP39Q53GS9 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
USP39Q53GS9 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
USP39Q53GS9 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
USP39Q53GS9 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
USP39Q53GS9 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 HLA-A-202ENST00000376806 1854 ntBASIC16.32■□□□□ 0.2
USP39Q53GS9 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 TTTY23B-201ENST00000442790 549 ntBASIC16.32■□□□□ 0.2
USP39Q53GS9 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
USP39Q53GS9 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.32■□□□□ 0.2
USP39Q53GS9 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.32■□□□□ 0.2
USP39Q53GS9 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.32■□□□□ 0.2
USP39Q53GS9 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.32■□□□□ 0.2
USP39Q53GS9 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.32■□□□□ 0.2
USP39Q53GS9 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.32■□□□□ 0.2
USP39Q53GS9 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms