Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC063926.3-201ENST00000624734 5658 ntBASIC14.39□□□□□ -0.11
H3F3AP84243 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.39□□□□□ -0.11
H3F3AP84243 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
H3F3AP84243 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.39□□□□□ -0.11
H3F3AP84243 SPDYE17-201ENST00000412399 783 ntBASIC14.39□□□□□ -0.11
H3F3AP84243 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.39□□□□□ -0.11
H3F3AP84243 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.39□□□□□ -0.11
H3F3AP84243 METTL21AP1-201ENST00000438852 635 ntBASIC14.39□□□□□ -0.11
H3F3AP84243 EEF1DP4-201ENST00000446006 880 ntBASIC14.39□□□□□ -0.11
H3F3AP84243 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.39□□□□□ -0.11
H3F3AP84243 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.39□□□□□ -0.11
H3F3AP84243 AC051619.7-201ENST00000568314 623 ntBASIC14.39□□□□□ -0.11
H3F3AP84243 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.39□□□□□ -0.11
H3F3AP84243 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
H3F3AP84243 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.39□□□□□ -0.11
H3F3AP84243 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
H3F3AP84243 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H3F3AP84243 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
H3F3AP84243 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.38□□□□□ -0.11
H3F3AP84243 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
H3F3AP84243 AC134407.2-201ENST00000625089 1978 ntBASIC14.38□□□□□ -0.11
H3F3AP84243 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
H3F3AP84243 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.38□□□□□ -0.11
H3F3AP84243 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.38□□□□□ -0.11
H3F3AP84243 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.38□□□□□ -0.11
H3F3AP84243 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.38□□□□□ -0.11
H3F3AP84243 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.38□□□□□ -0.11
H3F3AP84243 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.38□□□□□ -0.11
H3F3AP84243 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.38□□□□□ -0.11
H3F3AP84243 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.38□□□□□ -0.11
H3F3AP84243 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.38□□□□□ -0.11
H3F3AP84243 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.38□□□□□ -0.11
H3F3AP84243 AC093028.1-201ENST00000622998 982 ntBASIC14.38□□□□□ -0.11
H3F3AP84243 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
H3F3AP84243 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
H3F3AP84243 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
H3F3AP84243 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.38□□□□□ -0.11
H3F3AP84243 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.38□□□□□ -0.11
H3F3AP84243 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 BNIP3P1-202ENST00000550043 1585 ntBASIC14.38□□□□□ -0.11
H3F3AP84243 AC010491.1-201ENST00000563101 2797 ntBASIC14.38□□□□□ -0.11
H3F3AP84243 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
H3F3AP84243 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 TUBB3P1-201ENST00000405796 1332 ntBASIC14.38□□□□□ -0.11
H3F3AP84243 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.38□□□□□ -0.11
H3F3AP84243 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.38□□□□□ -0.11
H3F3AP84243 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H3F3AP84243 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
H3F3AP84243 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
H3F3AP84243 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
H3F3AP84243 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.37□□□□□ -0.11
H3F3AP84243 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
H3F3AP84243 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.37□□□□□ -0.11
H3F3AP84243 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.37□□□□□ -0.11
H3F3AP84243 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.37□□□□□ -0.11
H3F3AP84243 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms